PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold14705-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 206aa    MW: 23753.4 Da    PI: 5.8333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold14705-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-2084133255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +y+GVr+++ +g+W++eIrdp     r  kr +lg+f taeeAa+a+++a+ +++g
  augustus_masked-scaffold14705-abinit-gene-0.0-mRNA-1  84 RYRGVRQRP-WGKWASEIRDP-----ReaKRKWLGTFLTAEEAARAYDKAAIEFRG 133
                                                           8********.**********9.....446************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-3283143No hitNo description
Gene3DG3DSA:3.30.730.104.7E-3284142IPR001471AP2/ERF domain
SMARTSM003801.6E-3784147IPR001471AP2/ERF domain
PfamPF008473.2E-1284133IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2284143IPR016177DNA-binding domain
PROSITE profilePS5103224.56684141IPR001471AP2/ERF domain
PRINTSPR003675.7E-148596IPR001471AP2/ERF domain
PRINTSPR003675.7E-14123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYGFNASNIY RCCPWRTRIT EEQEQDILVS ALKHVITGGI QGLTPQHYQL LQQQPVPPGA  60
APSSLPSTSK RRSKKKMKSD NEKRYRGVRQ RPWGKWASEI RDPREAKRKW LGTFLTAEEA  120
ARAYDKAAIE FRGPRAKLNF PMSDYVGKQS EIEQDQHEEN PNVNAETMTE SETQTVEVVE  180
RSGEDNEPSD WLTSEELDQL WKDLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2183142464ATERF1
3gcc_A1e-2183142464ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923452.11e-113ethylene-responsive transcription factor ERF071-like
TrEMBLA0A2N9H8T23e-57A0A2N9H8T2_FAGSY; Uncharacterized protein
STRINGXP_004294809.13e-38(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-20redox responsive transcription factor 1