PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold14918-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 97aa    MW: 10794 Da    PI: 10.1853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold14918-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.5e-117292222
                                                          --SS-EEEEEEE--TT-SS-E CS
                                                  WRKY  2 dDgynWrKYGqKevkgsefpr 22
                                                          +D ++WrKYGqK++kgs++pr
  augustus_masked-scaffold14918-abinit-gene-0.1-mRNA-1 72 SDSWAWRKYGQKPIKGSPYPR 92
                                                          69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-106392IPR003657WRKY domain
SuperFamilySSF1182902.09E-86792IPR003657WRKY domain
PROSITE profilePS5081112.2667292IPR003657WRKY domain
PfamPF031062.3E-67392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MNRRFHTNPF VTDPDEPELE NGPDSPSSGD DTKISSAPSP KKSKKDLKKR VVSVPIGDVE  60
GSKSKGEAYP PSDSWAWRKY GQKPIKGSPY PRRDPVR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883570.11e-56probable WRKY transcription factor 65
SwissprotQ93WV51e-29WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A2N9F8E02e-46A0A2N9F8E0_FAGSY; Uncharacterized protein
STRINGXP_010102121.11e-37(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-24WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]