PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold14943-abinit-gene-0.0-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 99aa MW: 10854.3 Da PI: 6.2305

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold14943-abinit-gene-0.0-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.3	7e-16	13	52	9	48
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 rr+CakdC++apyfp+++p+kfa+++k+FGa nv+k+ + augustus_masked-scaffold14943-abinit-gene-0.0-mRNA-1 13 RRQCAKDCIFAPYFPSDDPHKFAIINKVFGAGNVSKMSTL 52 89**********************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.45	4	99	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-13	13	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MGRDLMAVPP EWRRQCAKDC IFAPYFPSDD PHKFAIINKV FGAGNVSKMS TLSDSSSEIL 60 AAAFLDLKPN LSNEQQSSGD NAHLGHLMTT SPMTKQVEI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721547.1	4e-19	PREDICTED: LOB domain-containing protein 12-like
TrEMBL	A0A1U8M421	9e-18	A0A1U8M421_GOSHI; LOB domain-containing protein 12-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-20	LBD family protein