PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold14956-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 465aa MW: 51419 Da PI: 8.4745

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold14956-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	23	2.2e-07	16	65	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 aC aCk +r++C++dC +a+ f+ e+++ f ++ ++ + k+l++++ augustus_masked-scaffold14956-abinit-gene-0.1-mRNA-1 16 ACGACKNMRKGCKDDCCFAEFFAPEDAEIFGKLKLHIPVKVMRKTLSNAN 65 7*********************9999999988776666666666666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.522	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-6	16	68	IPR004883	Lateral organ boundaries, LOB
Pfam	PF16913	8.0E-12	222	287	No hit	No description
Pfam	PF16913	4.7E-18	289	359	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MTLYLSSCAS ETDIMACGAC KNMRKGCKDD CCFAEFFAPE DAEIFGKLKL HIPVKVMRKT 60 LSNANATKEY KKQRVQEWKA RVNAKGKEKQ AGSSSSKNEK KELQASKCQA ASSNELGCKD 120 NCLFADLFSP EAKERIVEII NEQGMEMVET EVKLMLEKLC RKTEDEYLLK LVLRLVRMML 180 ANNVYTSPPP SNSSSNGGSS STPSAPLVPG LVVLLPISLT ISQDGNSKWV ATLVQTAAFP 240 ILLIPFFLIH FFKEPSTSLA LRSFKILALI YFSLRVLIAS DNMIYSFFVN DDSDGPSGVS 300 KWQCIIGFLY TLRAFALHSL SLSLMHFPFQ KVLKSETYSV VLEMQICTAL VATCVSIVGN 360 GRLFVWKCIA SVAITPIASM IVFHDKMNGI VEIATLLASF CRGRRSQSDH NLNVLSIETS 420 AKASFNIKEL FRKIAAALPG METLFLTNQE DMVDVNLKSS NAFAT

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MTLYLSSCAS ETDIMACGAC KNMRKGCKDD CCFAEFFAPE DAEIFGKLKL HIPVKVMRKT  60
LSNANATKEY KKQRVQEWKA RVNAKGKEKQ AGSSSSKNEK KELQASKCQA ASSNELGCKD  120
NCLFADLFSP EAKERIVEII NEQGMEMVET EVKLMLEKLC RKTEDEYLLK LVLRLVRMML  180
ANNVYTSPPP SNSSSNGGSS STPSAPLVPG LVVLLPISLT ISQDGNSKWV ATLVQTAAFP  240
ILLIPFFLIH FFKEPSTSLA LRSFKILALI YFSLRVLIAS DNMIYSFFVN DDSDGPSGVS  300
KWQCIIGFLY TLRAFALHSL SLSLMHFPFQ KVLKSETYSV VLEMQICTAL VATCVSIVGN  360
GRLFVWKCIA SVAITPIASM IVFHDKMNGI VEIATLLASF CRGRRSQSDH NLNVLSIETS  420
AKASFNIKEL FRKIAAALPG METLFLTNQE DMVDVNLKSS NAFAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-