PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold15592-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 471aa    MW: 52594.6 Da    PI: 7.5308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold15592-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13296341454
                                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                           +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  augustus_masked-scaffold15592-abinit-gene-0.0-mRNA-1 296 NHVEAERQRREKLNNRFYALRSVVPNV-----SKMDKASLLADAVVYIKEL 341
                                                           699***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-4613190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.091292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-18294359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-14296345No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17296359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-16298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEESSSSSPP SPLQQQLQYL VETRPEWWVY SIFWQASKDS NGRVALSWGD GYFRGTRDFV  60
SKAMGNKEDQ RNIYKAMTKG KQALFDEEMD VDRLVEGHVT ESDWFYIVSV TRTFGLRDCV  120
LGRAYGTGGY IWLTGDHELQ YYECDRVKEA RGHGVQTLLC VATSRGVVEL GSSDVIKEDW  180
GLVQFVKTLF GCESTSTSTA LVSKQGNNPE GQVPIAISRD VSFLNIGMNS VTPKEWTFQG  240
KQSESDAMKE GVSLGRSSSD SGEPSDSDGL LAFERTENRI KKRGRKPVIG REIPINHVEA  300
ERQRREKLNN RFYALRSVVP NVSKMDKASL LADAVVYIKE LKAKIDELEA KIKAQSQKIK  360
LSLVNGFYDK PNITAVVDHN RATTSSSFSV PSMEVEVQIV GSEAIIRVQC PDVNFPSAKL  420
MNALRDLELR VHYASASSVK EMMLQVVVVK VHNGFASGEA MRSAILQKMQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-27289363178Transcription factor MYC2
5gnj_B4e-27289363178Transcription factor MYC2
5gnj_E4e-27289363178Transcription factor MYC2
5gnj_F4e-27289363178Transcription factor MYC2
5gnj_G4e-27289363178Transcription factor MYC2
5gnj_I4e-27289363178Transcription factor MYC2
5gnj_M4e-27289363178Transcription factor MYC2
5gnj_N4e-27289363178Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910538.10.0transcription factor MYC2-like
TrEMBLA0A2N9FZP80.0A0A2N9FZP8_FAGSY; Uncharacterized protein
STRINGXP_002518914.11e-172(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-58bHLH family protein