PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold17423-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 182aa    MW: 20163.3 Da    PI: 5.0889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold17423-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192172156
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                          s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g+
  augustus_masked-scaffold17423-abinit-gene-0.1-mRNA-1 21 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRGH 72
                                                          67*****999.**********8...557***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-232180IPR016177DNA-binding domain
PfamPF008476.9E-132172IPR001471AP2/ERF domain
CDDcd000185.45E-232181No hitNo description
PROSITE profilePS5103223.5512279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-322280IPR001471AP2/ERF domain
SMARTSM003809.2E-392285IPR001471AP2/ERF domain
PRINTSPR003673.7E-102334IPR001471AP2/ERF domain
PRINTSPR003673.7E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEEEPNSSGN TSSTSHGAAS SSYRGVRKRK WGKWVSEIRE PGKKTRIWLG SFETPEMAAA  60
AYDVAALHFR GHEARLNFPE LVHSLPRPAS SNSEHIRMAA HEAALRLRGS QGVAEVGGGS  120
SSNMAPVTVR LSPSQIEAIN EFPLDSPSKM WMQTAMEESM TFSNDIEDNE WEDMQNDSLW  180
DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-181884168ATERF1
3gcc_A4e-181884168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882172.11e-120ethylene-responsive transcription factor ERF021-like
RefseqXP_023885779.11e-120ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I29e-71ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2N9GI641e-100A0A2N9GI64_FAGSY; Uncharacterized protein
STRINGEMJ247846e-83(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-72ERF family protein