PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold18135-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 187aa    MW: 20482.3 Da    PI: 8.5177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold18135-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00163759123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          ++C+ C++ F++   L  H  +H
  augustus_masked-scaffold18135-abinit-gene-0.0-mRNA-1 37 FECKTCNRQFPSFQALGGHRASH 59
                                                          89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-935108No hitNo description
PfamPF139123.1E-133661IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8273764IPR007087Zinc finger, C2H2
SMARTSM003550.163759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
PfamPF139128.0E-1085109IPR007087Zinc finger, C2H2
SMARTSM003550.5886108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.93386108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKREREFDHS VTMANCLMLL SRGSEIEAFS NSPSRVFECK TCNRQFPSFQ ALGGHRASHK  60
KPRLMGGEHG SLDSQSQGSP TKPKTHECSV CGLEFAIGQA LGGHMRRHRT ALNESQVPLN  120
LTENMQGPLS FTSSQGSATS PLSFTSSQGL STINSRRALC LDLNLTPFEN DLVILKLKPA  180
PMVDCFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904777.11e-132zinc finger protein ZAT12-like
TrEMBLA0A2N9IK367e-83A0A2N9IK36_FAGSY; Uncharacterized protein
STRINGXP_008233585.19e-68(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-40C2H2 family protein