PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold24451-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 289aa    MW: 32148.4 Da    PI: 4.7435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold24451-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29e-094262346
                                                          -HHHHHHHHTTTS-HHHHHHHHHH CS
                                       Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                                                          +W++Ia+ ++ gRt++++k++w++
  augustus_masked-scaffold24451-abinit-gene-0.1-mRNA-1  4 RWSLIAKQLP-GRTDNDVKNYWNT 26
                                                          5*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.016132IPR017930Myb domain
SuperFamilySSF466894.65E-8337IPR009057Homeodomain-like
CDDcd001675.79E-7428No hitNo description
Gene3DG3DSA:1.10.10.601.2E-13439IPR009057Homeodomain-like
PfamPF002491.2E-6426IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MWCRWSLIAK QLPGRTDNDV KNYWNTKLRK KLSKMGIDPV THKPYSQILS DYGNISGMLN  60
TGNQIGPLNK NLNYASTPKL EPSSVLTSFP NTNMINMPME FQNSPSNENI VPSLDFMSHQ  120
FQQVNINQET IQPHFFNEAT SSCSSSSSSN VTQLSPLPQS YSCQLSQVQN SPSSSFNWSE  180
FLITDPLPFP GFQQQQDRHF PGFSSSTNPS TFAQTPPLNF ASGNEYGLNQ VGHEEGIGKF  240
DVGSTIGGHT NNNRLEASSS VSSFVNSILD KDSEMQAEFP DILDESFDY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915988.10.0transcription factor MYB35
TrEMBLA0A2N9ELE51e-145A0A2N9ELE5_FAGSY; Uncharacterized protein
STRINGVIT_14s0066g02180.t013e-69(Vitis vinifera)
STRINGEMJ189736e-70(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-27MYB family protein