PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold28953-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 325aa    MW: 34347.7 Da    PI: 8.038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold28953-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1883134155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++++GV +++ +g+++AeIrdp++ g  +r++lg++ t+e+Aa a+++a+ k+ g
  augustus_masked-scaffold28953-abinit-gene-0.0-mRNA-1  83 PCFRGVKRRP-WGKYAAEIRDPKKKG--ARIWLGTYKTPEDAALAYDEAAFKMSG 134
                                                           689*******.**********96643..************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-1383134IPR001471AP2/ERF domain
SMARTSM003801.2E-3084148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2984143IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2084143IPR016177DNA-binding domain
PROSITE profilePS5103221.91884142IPR001471AP2/ERF domain
CDDcd000187.12E-2685142No hitNo description
PRINTSPR003671.0E-88596IPR001471AP2/ERF domain
PRINTSPR003671.0E-8108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADLELAEKS DLSNLLMQCF FSDFEPPTTM MFSQSPSFAE IVFPVESSGS GSGNVVDPVK  60
VEPLEAANKE GVLAAAGREA YAPCFRGVKR RPWGKYAAEI RDPKKKGARI WLGTYKTPED  120
AALAYDEAAF KMSGSKAKLD FPTYKAFCAI RILSNQGESS GSGSGSGGGA GEGRNGGNQG  180
VGGGGRREGI GNERRGNSGR NHGGANGGGD DDGDDRGGWV GYIGGEWGPM GPGPRRREEI  240
QLALNAQMIG TLESFDIHDL PARARIFRVV SFAFNSVALV VLSASIGQRR TSPRLASILS  300
WIGSFATLLG FISMIAMAFS ASFIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2485142663ATERF1
3gcc_A4e-2485142663ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590RGVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-30ethylene-responsive element binding factor 13