PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold32910-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 249aa    MW: 27982.1 Da    PI: 4.4416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold32910-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-102359745
                                                          HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                                       Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                                          eE+   +++ +q+ ++ W++Ia +++ gRt++++k++w+
  augustus_masked-scaffold32910-abinit-gene-0.0-mRNA-1 23 EEERVVIELQAQFWNK-WARIATYLP-GRTDNDVKNFWN 59
                                                          9999************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.71666IPR017930Myb domain
SMARTSM007171.0E-41664IPR001005SANT/Myb domain
PfamPF002491.3E-82360IPR001005SANT/Myb domain
CDDcd001671.00E-82359No hitNo description
Gene3DG3DSA:1.10.10.602.4E-142361IPR009057Homeodomain-like
SuperFamilySSF466892.18E-92369IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MYVIVYASSS HVVVFDENFD HVEEERVVIE LQAQFWNKWA RIATYLPGRT DNDVKNFWNS  60
RQKRLARILQ ISGTANEPQK NKRAVQTCHD VPASQLNVAK FSSSSEGESS SKAQSASSSC  120
IENYEMIKMV PLTDLLNSNL VYFGKDLAHH ELSQDEKNSC TESQSQIPFS EIPQPKPELT  180
FSPESQELLA KLEDPNIFDM FGTLDACELG NGAQLPIGAQ LFEPVGSCRS DAKENNDNPI  240
TPYSFFDDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4640592e-46AM464059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X130291.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927734.11e-139transcription factor DUO1-like
TrEMBLA0A2I4HDS41e-102A0A2I4HDS4_JUGRE; transcription factor MYB59 isoform X2
STRINGVIT_15s0021g02040.t013e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-27MYB family protein