PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold35799-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 82aa    MW: 9620.04 Da    PI: 7.5066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold35799-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-179733498
                                                          SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                                                    B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                                                          +  +le+ +gr+W v++ y+ +s+++ +++GW eF++ n+L egD++vF+l++r+   l
  augustus_masked-scaffold35799-abinit-gene-0.0-mRNA-1  9 QIAKLENFEGRQWPVNCYYKPSSSAMNMGQGWIEFARHNDLAEGDVCVFELIKRKPVVL 67
                                                          4689*************99**********************************999999 PP

                                                          EEEEE- CS
                                                    B3 93 vvkvfr 98
                                                          +v++fr
  augustus_masked-scaffold35799-abinit-gene-0.0-mRNA-1 68 NVSMFR 73
                                                          999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.717175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16477IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-16473No hitNo description
PfamPF023624.3E-15773IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
FKYLHQHDQI AKLENFEGRQ WPVNCYYKPS SSAMNMGQGW IEFARHNDLA EGDVCVFELI  60
KRKPVVLNVS MFRVVDYDIP AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1527773145B3 domain-containing transcription factor VRN1
4i1k_B1e-1527773145B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901678.15e-34B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9G2Y25e-27A0A2N9G2Y2_FAGSY; Uncharacterized protein
STRINGXP_004145349.14e-16(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-17related to vernalization1 1