PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_101999_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 196aa MW: 22360.2 Da PI: 5.0459

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_101999_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.9	4.6e-25	88	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek. 72 +fY +YA++vGF vr ++++s+ +g++ r++ C+k+g+++++k++ r++r++ r gC+a++ v++ + cra_locus_101999_iso_1_len_586_ver_3 88 RFYYDYARRVGFVVRLMQKRRSEIDGKTLARRLGCNKQGFSTSTKTRIGPDRKPRPSARGGCNATILVRLLEk 160 5******************************************************************9888 PP FAR1 73 dgkwevtkleleHnHela 90 +gkw+ t++e+eHnH+l+ cra_locus_101999_iso_1_len_586_ver_3 161 SGKWVCTRFEKEHNHPLV 178 **************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-22	88	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
XDCIWIFKTS PVALLTXNSD LYNWDFSMQS SLTKQGNAAE LEGDDGKFED LEENDVTEKE 60 ESGSQVEGGE VLEPFEGMEF DSEDDARRFY YDYARRVGFV VRLMQKRRSE IDGKTLARRL 120 GCNKQGFSTS TKTRIGPDRK PRPSARGGCN ATILVRLLEK SGKWVCTRFE KEHNHPLVVS 180 DPTEYTNMGD KEKKIX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089611.1	3e-69	protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2G9G2Z9	4e-72	A0A2G9G2Z9_9LAMI; Uncharacterized protein
STRING	Migut.N00673.1.p	2e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25