PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10206_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ZF-HD

Protein Properties

Length: 306aa MW: 34075.2 Da PI: 8.2735

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10206_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.9	2.1e-32	74	130	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + v+Y+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e cra_locus_10206_iso_4_len_1639_ver_3 74 KMVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEG 130 6799***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.9E-29	76	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-26	76	131	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-31	77	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.559	78	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.29E-18	223	292	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-30	225	293	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-26	231	287	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MELPSQEGEM PIPLNSTYGG HMIHHDHSSS TVVPSQMPNS SNNNGPISSN NNNLDQDLHH 60 HNQNHHNVVV NFKKMVKYRE CLKNHAAAMG GNATDGCGEF MPSGEEGTIE ALTCSACNCH 120 RNFHRKEIEG EPSSCDYCYS SPPHLNRING RKLVLGHHHH HHKAILGAEP LGYPIPSRTA 180 APIVPHHPMI MSYNMAGSLP SESDEQEEGG HGGGGGHGGV LVRPSHHQLV KKRFRTKFSQ 240 EQKEKMLNFA EKVGWKIQKQ EEGVVQQFCQ EVGVKRRVLK VWMHNNKHNL AKKNNNNISI 300 NPQSQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-23	232	289	18	75	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015578866.1	1e-127	zinc-finger homeodomain protein 3
Swissprot	O64722	9e-79	ZHD3_ARATH; Zinc-finger homeodomain protein 3
Swissprot	Q9M9S0	1e-78	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A068TN67	1e-129	A0A068TN67_COFCA; Uncharacterized protein
STRING	XP_002525870.1	1e-126	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5154	23	38

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]