PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10231_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 417aa    MW: 44775.5 Da    PI: 9.3566
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10231_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.78.2e-381002492126
                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......... 65 
                                            g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el++          
  cra_locus_10231_iso_1_len_1633_ver_3 100 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSISELPSIntsfpdtpq 172
                                           689***********************************************************99777776666 PP

                                   TCP  66 ...............ssssaseceaesssssasnsssg.................kaaksaakskksqksaas 106
                                                          +++sa                 +                 + +ksa +s +++++ ++
  cra_locus_10231_iso_1_len_1633_ver_3 173 qlsdekrsspagtehGFDSA-----------------EvemevepnnfhqqqqhgNLSKSACSSTSETSKGSA 228
                                           66666554444333322222.................022222222222223333334444466666666677 PP

                                   TCP 107 alnlak.esrakarararert 126
                                            l+l++ esr kar+rarer 
  cra_locus_10231_iso_1_len_1633_ver_3 229 GLSLSRsESRIKARERARERA 249
                                           8999999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-43101249IPR005333Transcription factor, TCP
PROSITE profilePS5136931.825102160IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
XSSSSSSSTR TLGQIHHLQQ SLAASVSSPL FSITGDHHSS EIPHFSFVPD HLIPVVTTAA  60
GGSSANNNNN NNSGNGEYNL NFTISSSSSS GLAAAGFRAS GGKDRHSKVW TSKGLRDRRV  120
RLSVNTAIQF YDLQDRLGYD QPSKAVEWLL KAAASSISEL PSINTSFPDT PQQLSDEKRS  180
SPAGTEHGFD SAEVEMEVEP NNFHQQQQHG NLSKSACSST SETSKGSAGL SLSRSESRIK  240
ARERARERAG GGGGNNNGNS IESKFFHKSN RQWSSSTMDY FTTGGGLLGP SSSSSTRTXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXSGLA AAGFNRGTLQ SNSSTAPSLL PQIQRFTTPL  360
DGPSAFYITA QPNAAAVASV ENHNHHHHHF LPRFDAGLQL CYGDGNRHSD HKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-24107161155Putative transcription factor PCF6
5zkt_B5e-24107161155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019424612.14e-80PREDICTED: transcription factor TCP24-like isoform X4
TrEMBLA0A1J7FVI72e-78A0A1J7FVI7_LUPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252