PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10231_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 414aa    MW: 44655.9 Da    PI: 9.7363
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10231_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.88.1e-38972462126
                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......... 65 
                                            g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el++          
  cra_locus_10231_iso_8_len_1833_ver_3  97 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSISELPSIntsfpdtpq 169
                                           689***********************************************************99777776666 PP

                                   TCP  66 ...............ssssaseceaesssssasnsssg.................kaaksaakskksqksaas 106
                                                          +++sa                 +                 + +ksa +s +++++ ++
  cra_locus_10231_iso_8_len_1833_ver_3 170 qlsdekrsspagtehGFDSA-----------------EvemevepnnfhqqqqhgNLSKSACSSTSETSKGSA 225
                                           66666554444333322222.................022222222222223333334444466666666677 PP

                                   TCP 107 alnlak.esrakarararert 126
                                            l+l++ esr kar+rarer 
  cra_locus_10231_iso_8_len_1833_ver_3 226 GLSLSRsESRIKARERARERA 246
                                           8999999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-4398246IPR005333Transcription factor, TCP
PROSITE profilePS5136931.82599157IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEVEEMQTQS SCKFPRIRNG NGRTDSAKIG QKRETQYADE EDADGEEVKG NGNGTGGGRG  60
GGGRGSGSGR LDITAAGGLG RLCGWPSSRI VRVSRASGGK DRHSKVWTSK GLRDRRVRLS  120
VNTAIQFYDL QDRLGYDQPS KAVEWLLKAA ASSISELPSI NTSFPDTPQQ LSDEKRSSPA  180
GTEHGFDSAE VEMEVEPNNF HQQQQHGNLS KSACSSTSET SKGSAGLSLS RSESRIKARE  240
RARERAGGGG GNNNGNSIES KFFHKSNRQW SSSTMDYFTT GGGLLGPSSS SSTRTXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXSGLAAAG FNRGTLQSNS STAPSLLPQI QRFTTPLDGP  360
SAFYITAQPN AAAVASVENH NHHHHHFLPR FDAGLQLCYG DGNRHSDHKG KGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-24104158155Putative transcription factor PCF6
5zkt_B5e-24104158155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662GGRGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236914.11e-101PREDICTED: transcription factor TCP2
RefseqXP_017236916.11e-101PREDICTED: transcription factor TCP2
RefseqXP_017236917.11e-101PREDICTED: transcription factor TCP2
RefseqXP_017236918.11e-101PREDICTED: transcription factor TCP2
TrEMBLA0A2I4EJY32e-99A0A2I4EJY3_JUGRE; transcription factor TCP2-like
STRINGGorai.009G153900.14e-96(Gossypium raimondii)