PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10261_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 432aa    MW: 47909.9 Da    PI: 8.3118
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10261_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-1071121155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           s y+GV++++++gr++A+++d  ++n+ ++k+      g  e Aa+a++ a++k++g
  cra_locus_10261_iso_1_len_1798_ver_3  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKK------GKQEAAARAYDLAALKYWG 121
                                           57*******************66667654533......666**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1071130IPR016177DNA-binding domain
PfamPF008472.9E-571121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-772130IPR001471AP2/ERF domain
PROSITE profilePS5103214.39472129IPR001471AP2/ERF domain
SMARTSM003806.9E-1672135IPR001471AP2/ERF domain
PRINTSPR003674.3E-57384IPR001471AP2/ERF domain
PRINTSPR003674.3E-5111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDSSSSQVSA KPEGGGGGEA SEIPVTVGTI PKVSDELALC RGLKKAKRER GCTAKERISK  60
MAPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQEAAAR AYDLAALKYW  120
GPGTLINFPV TDYTRDLEEM QNVSREDYLA SLRRKSSGFS RGVSKYRPLS SRWDPQFARV  180
PGATYFNSLS YGAGDDATAE SDYVGSFCID RKIDLTGYIK WWGSNKPRQV DFHIKSEETK  240
QCSSEDLVSE LKAVEWPNHP TEPYEMPRFG MPQEGNKHRD SNLSALSILS RSAAYKSLQE  300
KGLKKKEIDE NDENEDKNMI SKVNYGKEVE KSTYDSGTER HGVGFGIGGG LPPIQRSSYP  360
LAPLLSAPLL TNYNTIDPLT DPVLWTSLVS VLPAGSSRTA EVPKNESSSG YSLFQQEDXX  420
PTEVCGTSNS WT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089276.10.0AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_027184637.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-149AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7XA860.0A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009783849.10.0(Nicotiana sylvestris)