PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10348_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 348aa    MW: 37874.4 Da    PI: 8.1025
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10348_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.13.5e-2310561259
                                          EE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY 12 qKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                          +K+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  cra_locus_10348_iso_1_len_1643_ver_3 10 KKNVKGSENPRSYYKCTFPSCPTKKKVERSV-DGQITEIVYKGNHNHA 56
                                          79*****************************.***************7 PP
2WRKY106.81.1e-33178236159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  cra_locus_10348_iso_1_len_1643_ver_3 178 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRSVITTYEGKHNHD 236
                                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.05E-151058IPR003657WRKY domain
SMARTSM007743.2E-171057IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-181058IPR003657WRKY domain
PfamPF031061.2E-151055IPR003657WRKY domain
PROSITE profilePS5081115.7441058IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-38163238IPR003657WRKY domain
SuperFamilySSF1182901.7E-29170238IPR003657WRKY domain
PROSITE profilePS5081138.652173238IPR003657WRKY domain
SMARTSM007748.5E-39178237IPR003657WRKY domain
PfamPF031065.7E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVITGGNMDK KNVKGSENPR SYYKCTFPSC PTKKKVERSV DGQITEIVYK GNHNHAKPQS  60
TRRSSSSSSA SSVVIQAYNN SQTNEIGDQS YGSSTGNGQQ IDSVATPENS SISLADDDFE  120
QSSQKSGRSG GDDYDDDEPD TKKWKREFES EGISAPGGSR TVREPRVVVQ TTSDIDILDD  180
GYRWRKYGQK VVKGNPNPRS YYKCTSPGCP VRKHVERASH DLRSVITTYE GKHNHDVPAA  240
RGSGCNSMNR SLPSNGNNNA PIAIRPSANQ SSSSYPIPVR GMRPNSSSSE VGAAAPFTLE  300
MLQNSGGYGS GYGNSLSSYM NAPQENVFSS SKTKEEPRED MFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38169239878Probable WRKY transcription factor 4
2lex_A1e-38169239878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112057.11e-169WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-115WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A068U6E71e-167A0A068U6E7_COFCA; Uncharacterized protein
STRINGEMJ094891e-152(Prunus persica)
STRINGPGSC0003DMT4000432041e-153(Solanum tuberosum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]