PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10348_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 600aa    MW: 65439.5 Da    PI: 5.407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10348_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.5e-232302761259
                                           EE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY  12 qKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           +K+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  cra_locus_10348_iso_2_len_2388_ver_3 230 KKNVKGSENPRSYYKCTFPSCPTKKKVERSV-DGQITEIVYKGNHNHA 276
                                           79*****************************.***************7 PP
2WRKY105.72.4e-33430488159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  cra_locus_10348_iso_2_len_2388_ver_3 430 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRSVITTYEGKHNHD 488
                                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.2E-17230277IPR003657WRKY domain
PROSITE profilePS5081115.744230278IPR003657WRKY domain
PfamPF031061.8E-15230275IPR003657WRKY domain
SuperFamilySSF1182908.5E-15230278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-18230278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37415490IPR003657WRKY domain
SuperFamilySSF1182903.79E-29422490IPR003657WRKY domain
PROSITE profilePS5081138.652425490IPR003657WRKY domain
SMARTSM007748.5E-39430489IPR003657WRKY domain
PfamPF031061.2E-25431488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAASSGNFSF STSFMSTSFT DLLASDDYSV SAASSNKGLG LGDRIAERTG SGVPKFKSLP  60
PPSLPLSPPP ISPSSFFAIP PGLSPAELLD SPVLLSGSTI LPSPTTGTFP IQGYDWKIST  120
NSIKGEEKNY FSDFSFQPQP APAISRSQTN AIPSGQVQQA WNYQEPTKQD VKSDINPYQS  180
FSPEISSIQT NSQGFQSDYN NNNYNQSSSQ QTMSEEEEQK MVITGGNMDK KNVKGSENPR  240
SYYKCTFPSC PTKKKVERSV DGQITEIVYK GNHNHAKPQS TRRSSSSSSA SSVVIQAYNN  300
SQTNEIGDQS YGSSTGNGQQ IDSVATPENS SISLADDDFE QSSQKSGRSG GDDYDDDEPD  360
TKKWXASFII SLLENQENFF LQCIFFSYQL LMNDFRKREF ESEGISAPGG SRTVREPRVV  420
VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSPG CPVRKHVERA SHDLRSVITT  480
YEGKHNHDVP AARGSGCNSM NRSLPSNGNN NAPIAIRPSA NQSSSSYPIP VRGMRPNSSS  540
SEVGAAAPFT LEMLQNSGGY GSGYGNSLSS YMNAPQENVF SSSKTKEEPR EDMFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34421491878Probable WRKY transcription factor 4
2lex_A3e-34421491878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112057.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A068U6E70.0A0A068U6E7_COFCA; Uncharacterized protein
STRINGEOY346310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460