PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10348_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 452aa MW: 49521.3 Da PI: 5.0463

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10348_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.6	5.1e-23	230	276	12	59
EE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 12 qKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +K+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh cra_locus_10348_iso_3_len_2443_ver_3 230 KKNVKGSENPRSYYKCTFPSCPTKKKVERSV-DGQITEIVYKGNHNHA 276 79***************************.*************7 PP
2	WRKY	34.7	3.7e-11	398	419	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr cra_locus_10348_iso_3_len_2443_ver_3 398 LDDGYRWRKYGQKVVKGNPNPR 419 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-18	230	278	IPR003657	WRKY domain
Pfam	PF03106	1.3E-15	230	275	IPR003657	WRKY domain
SMART	SM00774	3.2E-17	230	277	IPR003657	WRKY domain
PROSITE profile	PS50811	15.744	230	278	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-15	230	278	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.5E-14	383	419	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-9	390	420	IPR003657	WRKY domain
PROSITE profile	PS50811	15.698	393	419	IPR003657	WRKY domain
SMART	SM00774	4.5E-6	398	434	IPR003657	WRKY domain
Pfam	PF03106	6.8E-7	399	420	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MAASSGNFSF STSFMSTSFT DLLASDDYSV SAASSNKGLG LGDRIAERTG SGVPKFKSLP 60 PPSLPLSPPP ISPSSFFAIP PGLSPAELLD SPVLLSGSTI LPSPTTGTFP IQGYDWKIST 120 NSIKGEEKNY FSDFSFQPQP APAISRSQTN AIPSGQVQQA WNYQEPTKQD VKSDINPYQS 180 FSPEISSIQT NSQGFQSDYN NNNYNQSSSQ QTMSEEEEQK MVITGGNMDK KNVKGSENPR 240 SYYKCTFPSC PTKKKVERSV DGQITEIVYK GNHNHAKPQS TRRSSSSSSA SSVVIQAYNN 300 SQTNEIGDQS YGSSTGNGQQ IDSVATPENS SISLADDDFE QSSQKSGRSG GDDYDDDEPD 360 TKKWKREFES EGISAPGGSR TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRY 420 KQFPPPFLFI FCCFWPLSYP NFGKIPLENS QK

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MAASSGNFSF STSFMSTSFT DLLASDDYSV SAASSNKGLG LGDRIAERTG SGVPKFKSLP  60
PPSLPLSPPP ISPSSFFAIP PGLSPAELLD SPVLLSGSTI LPSPTTGTFP IQGYDWKIST  120
NSIKGEEKNY FSDFSFQPQP APAISRSQTN AIPSGQVQQA WNYQEPTKQD VKSDINPYQS  180
FSPEISSIQT NSQGFQSDYN NNNYNQSSSQ QTMSEEEEQK MVITGGNMDK KNVKGSENPR  240
SYYKCTFPSC PTKKKVERSV DGQITEIVYK GNHNHAKPQS TRRSSSSSSA SSVVIQAYNN  300
SQTNEIGDQS YGSSTGNGQQ IDSVATPENS SISLADDDFE QSSQKSGRSG GDDYDDDEPD  360
TKKWKREFES EGISAPGGSR TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRY  420
KQFPPPFLFI FCCFWPLSYP NFGKIPLENS QK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112057.1	1e-177	WRKY transcription factor WRKY24-like
TrEMBL	A0A068U6E7	1e-171	A0A068U6E7_COFCA; Uncharacterized protein
STRING	EOY34631	1e-141	(Theobroma cacao)
STRING	EMJ09489	1e-141	(Prunus persica)