PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10348_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 568aa    MW: 61546.2 Da    PI: 5.7886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10348_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.26.9e-232302761259
                                           EE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY  12 qKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           +K+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  cra_locus_10348_iso_4_len_2292_ver_3 230 KKNVKGSENPRSYYKCTFPSCPTKKKVERSV-DGQITEIVYKGNHNHA 276
                                           79*****************************.***************7 PP
2WRKY105.82.3e-33398456159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  cra_locus_10348_iso_4_len_2292_ver_3 398 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRSVITTYEGKHNHD 456
                                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-18230278IPR003657WRKY domain
PfamPF031061.7E-15230275IPR003657WRKY domain
SuperFamilySSF1182907.98E-15230278IPR003657WRKY domain
PROSITE profilePS5081115.744230278IPR003657WRKY domain
SMARTSM007743.2E-17230277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37383458IPR003657WRKY domain
SuperFamilySSF1182903.53E-29390458IPR003657WRKY domain
PROSITE profilePS5081138.652393458IPR003657WRKY domain
SMARTSM007748.5E-39398457IPR003657WRKY domain
PfamPF031061.2E-25399456IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAASSGNFSF STSFMSTSFT DLLASDDYSV SAASSNKGLG LGDRIAERTG SGVPKFKSLP  60
PPSLPLSPPP ISPSSFFAIP PGLSPAELLD SPVLLSGSTI LPSPTTGTFP IQGYDWKIST  120
NSIKGEEKNY FSDFSFQPQP APAISRSQTN AIPSGQVQQA WNYQEPTKQD VKSDINPYQS  180
FSPEISSIQT NSQGFQSDYN NNNYNQSSSQ QTMSEEEEQK MVITGGNMDK KNVKGSENPR  240
SYYKCTFPSC PTKKKVERSV DGQITEIVYK GNHNHAKPQS TRRSSSSSSA SSVVIQAYNN  300
SQTNEIGDQS YGSSTGNGQQ IDSVATPENS SISLADDDFE QSSQKSGRSG GDDYDDDEPD  360
TKKWKREFES EGISAPGGSR TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRS  420
YYKCTSPGCP VRKHVERASH DLRSVITTYE GKHNHDVPAA RGSGCNSMNR SLPSNGNNNA  480
PIAIRPSANQ SSSSYPIPVR GMRPNSSSSE VGAAAPFTLE MLQNSGGYGS GYGNSLSSYM  540
NAPQENVFSS SKTKEEPRED MFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37389459878Probable WRKY transcription factor 4
2lex_A1e-37389459878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112057.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A068U6E70.0A0A068U6E7_COFCA; Uncharacterized protein
STRINGEOY346310.0(Theobroma cacao)