PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_104442_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 123aa MW: 14205.9 Da PI: 4.7292

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_104442_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.3	1.7e-05	60	106	8	53
-HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ ql+ L + +k +r+++ +++ + + ++L+ ++V WF +R cra_locus_104442_iso_1_len_433_ver_3 60 KTWQLKKLAYALRKgKRKLNNAMISSIVHVTNLPRKRVLKWFEDKRS 106 5678888888888889****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-4	32	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-5	59	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
ITEEDLAKLE RELEEALKDD ELLGEIGSIA NEKTESNKAE DEHAVEEDDN EDEDMLEKLK 60 TWQLKKLAYA LRKGKRKLNN AMISSIVHVT NLPRKRVLKW FEDKRSEEGV PANRLPYQPS 120 SKS

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361722.1	1e-27	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	9e-16	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	M1BV57	3e-26	M1BV57_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400053577	4e-27	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9428	23	27

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]