PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1044_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

VOZ

Protein Properties

Length: 484aa MW: 53897.3 Da PI: 5.8285

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1044_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	423.4	3.7e-130	205	424	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvq 71 ppp+aflgpkcalwdc+rpaq ew+ qdycss+hat+a eg pg++pvlrp+gi+lkd+llfaalsak+q cra_locus_1044_iso_8_len_2357_ver_3 205 PPPAAFLGPKCALWDCPRPAQRLEWCqtsQDYCSSYHATIAPAEGYPGMAPVLRPGGIGLKDNLLFAALSAKAQ 278 89*********************944459*************************************** PP VOZ 72 gkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm 145 g++vgipecegaat+kspwna+elfdl++legetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm cra_locus_1044_iso_8_len_2357_ver_3 279 GRDVGIPECEGAATTKSPWNAPELFDLAVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVM 352 ********************************************************************** PP VOZ 146 kefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +efgglkrsyymdpqp++s+ewhlyeyein++d +alyrlelklvd+kks+kgkv++ds++dlqk++ +lta cra_locus_1044_iso_8_len_2357_ver_3 353 NEFGGLKRSYYMDPQPMKSYEWHLYEYEINKYDVCALYRLELKLVDGKKSPKGKVANDSVSDLQKQMKKLTA 424 ********************************************************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRTIDVAV LEEQVHQMLR 60 EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSSLTPPKSE PGIQKVDGGA 120 AFQEAFNNCH VTQEQSFHLL DQCKNTPGAN TMGISNMGVA APLDYHPFDL HQDFEHQYFT 180 GFEGTGICGE DALSQIPNFA QNFCPPPAAF LGPKCALWDC PRPAQRLEWC QTSQDYCSSY 240 HATIAPAEGY PGMAPVLRPG GIGLKDNLLF AALSAKAQGR DVGIPECEGA ATTKSPWNAP 300 ELFDLAVLEG ETIREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPMK SYEWHLYEYE INKYDVCALY RLELKLVDGK KSPKGKVAND SVSDLQKQMK 420 KLTAEFPSDN KRTVKGNSKA NTKDVNGSIH SNPNRMPQTN EAFDYGTGAP FEYLVDNLNG 480 YYIT

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRTIDVAV LEEQVHQMLR  60
EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSSLTPPKSE PGIQKVDGGA  120
AFQEAFNNCH VTQEQSFHLL DQCKNTPGAN TMGISNMGVA APLDYHPFDL HQDFEHQYFT  180
GFEGTGICGE DALSQIPNFA QNFCPPPAAF LGPKCALWDC PRPAQRLEWC QTSQDYCSSY  240
HATIAPAEGY PGMAPVLRPG GIGLKDNLLF AALSAKAQGR DVGIPECEGA ATTKSPWNAP  300
ELFDLAVLEG ETIREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR  360
SYYMDPQPMK SYEWHLYEYE INKYDVCALY RLELKLVDGK KSPKGKVAND SVSDLQKQMK  420
KLTAEFPSDN KRTVKGNSKA NTKDVNGSIH SNPNRMPQTN EAFDYGTGAP FEYLVDNLNG  480
YYIT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105411.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A068TU11	0.0	A0A068TU11_COFCA; Uncharacterized protein
STRING	XP_009776508.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]