PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10450_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 142aa    MW: 16439.8 Da    PI: 4.3449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10450_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.65.7e-11309755128
                                  NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          e ew+fF+++++       +n +t +gyW+ +    e+   +++ +glk+t++f+ g  ++g++++ ++hey+l
  cra_locus_10450_iso_3_len_709_ver_3  30 EGEWFFFTNSRSD-----DHNLVTPNGYWHPKTLPIEIEL-ENTIIGLKQTFTFHWGIPSNGKESKFLIHEYKL 97 
                                          4599999998765.....56889***************99.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6631112IPR003441NAC domain
PfamPF023653.3E-82297IPR003441NAC domain
SuperFamilySSF1019411.44E-1230110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MASSSSRSKD QKNDEKKEDE EEEKFIGGVE GEWFFFTNSR SDDHNLVTPN GYWHPKTLPI  60
EIELENTIIG LKQTFTFHWG IPSNGKESKF LIHEYKLNKE GGNFVACRVR DMEAFSKGQK  120
EEEDWNSDFG EVHEGDSEDD EN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177580.12e-20NAC domain-containing protein 41-like