PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10450_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 185aa    MW: 21511.7 Da    PI: 4.5179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10450_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.8e-18151402128
                                  NAM   2 ppGfrFhPtdeelvveyLkkk..vegkk..leleevikev.diykvePwdLp.kkvkaeek.ewyfFskrdkky 68 
                                          p G++F P++e l+ +y k +  + + +  l+l +vi+++ ++y+++P ++p +k+ ++ + ew+fF+++++  
  cra_locus_10450_iso_4_len_670_ver_3  15 PLGYKFFPSEEILM-DYVKLRngIVDGTrkLPL-HVIPTIeNLYSFNPDQIPfHKFIGGVEgEWFFFTNSRSD- 85 
                                          78******987776.775544234444434555.78999989**********755555555599999998765. PP

                                  NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               +n +t +gyW+ +    e+   +++ +glk+t++f+ g  ++g++++ ++hey+l
  cra_locus_10450_iso_4_len_670_ver_3  86 ----DHNLVTPNGYWHPKTLPIEIEL-ENTIIGLKQTFTFHWGIPSNGKESKFLIHEYKL 140
                                          ....56889***************99.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-2013153IPR003441NAC domain
PROSITE profilePS5100523.48514155IPR003441NAC domain
PfamPF023653.3E-1115140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
XKKEDEEEEI KLPPPLGYKF FPSEEILMDY VKLRNGIVDG TRKLPLHVIP TIENLYSFNP  60
DQIPFHKFIG GVEGEWFFFT NSRSDDHNLV TPNGYWHPKT LPIEIELENT IIGLKQTFTF  120
HWGIPSNGKE SKFLIHEYKL NKEGGNFVAC RVRDMEAFSK GQKEEEDWNS DFGEVHEGDS  180
EDDEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-1321405140Stress-induced transcription factor NAC1