PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10511_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 419aa    MW: 45659.5 Da    PI: 8.4184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10511_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.1e-124772227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                          +++ C+++ rtG C+yG++C+F+H+p
  cra_locus_10511_iso_1_len_2964_ver_3 47 GEPDCSYYIRTGLCRYGATCRFNHPP 72
                                          6899********************97 PP
2zf-CCCH38.91.4e-1293117327
                                           S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                           +++C+++++tGtCk+G++CkF+H++
  cra_locus_10511_iso_1_len_2964_ver_3  93 QPECQYYLKTGTCKFGATCKFHHPR 117
                                           799********************96 PP
3zf-CCCH35.31.9e-11129151527
                                           --SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                            C +++rtG+Ck+G++CkF+H++
  cra_locus_10511_iso_1_len_2964_ver_3 129 DCAYYLRTGHCKFGSTCKFHHPQ 151
                                           6********************97 PP
4zf-CCCH38.71.6e-12279305127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C+f+++tG Ck+G+ CkF+H++
  cra_locus_10511_iso_1_len_2964_ver_3 279 PGQPECQFYMKTGDCKFGAVCKFHHPR 305
                                           5789*********************96 PP
5zf-CCCH40.25.5e-13325351127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ++++lC f++r+G+Ck+G++CkF H++
  cra_locus_10511_iso_1_len_2964_ver_3 325 PGEPLCIFYSRYGICKFGPSCKFDHPM 351
                                           589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2394573IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-64572IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-84772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-45171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35690118IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-690117IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047124152IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4125151IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9129151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5129152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4130150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502278306IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6278305IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5282307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4284306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709324352IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7324351IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDFDAGIPIS RASVTEGPSS LDQDALWQMN LRSRETIESG GYPVREGEPD CSYYIRTGLC  60
RYGATCRFNH PPNRKLAIAT ARMRGEYPER VGQPECQYYL KTGTCKFGAT CKFHHPRDKA  120
GIAGKNEIDC AYYLRTGHCK FGSTCKFHHP QPANMMVSLR GSAVYPPVQS PTNAGQLSYP  180
RASFIPSPRW QGPSSYAPML LPQGMVSVPG WSAYSGQVAS GSSSENLQQT SGSTQTLGTS  240
RQSEAANFES QGTHSSYPSA SVPMGYYALQ REAVFPERPG QPECQFYMKT GDCKFGAVCK  300
FHHPRERVIP APDCVLSSIG LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGVFTYNLPS  360
SSTEVPAVRR LLASSSSGSA TLTLASEGLI EASSSKARRL PLSEARKMPS GDASIDPEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087150.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A068U9F40.0A0A068U9F4_COFCA; Uncharacterized protein
STRINGXP_004302155.10.0(Fragaria vesca)