PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10511_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 171aa    MW: 18516.8 Da    PI: 8.0386
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10511_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.9e-133157127
                                          --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                          +++++C+f+++tG Ck+G+ CkF+H++
  cra_locus_10511_iso_2_len_1986_ver_3 31 PGQPECQFYMKTGDCKFGAVCKFHHPR 57
                                          5789*********************96 PP
2zf-CCCH41.91.6e-1377103127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ++++lC f++r+G+Ck+G++CkF H++
  cra_locus_10511_iso_2_len_1986_ver_3  77 PGEPLCIFYSRYGICKFGPSCKFDHPM 103
                                           689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5023058IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-63057IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-93257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-63459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-53658IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.70976104IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-776103IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-1178103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-679104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-481101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
XSQGVTSPYR QASGPMGYYA LQGENVFPER PGQPECQFYM KTGDCKFGAV CKFHHPRERV  60
IPAPDCVLSS IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD HPMGVFTYNL PSSSTEVPAV  120
RRLLASSSSG SATLTLASEG LIEASSSKAR RLPLSEARKM PSGDASIDPE E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550988.14e-93PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_019066595.14e-93zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_027768588.14e-93zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF92e-83ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0V0IMW33e-94A0A0V0IMW3_SOLCH; Putative zinc finger CCCH domain-containing protein ZFN-like
STRINGSolyc11g008900.1.11e-91(Solanum lycopersicum)
STRINGPGSC0003DMT4000418442e-91(Solanum tuberosum)