PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10511_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 349aa    MW: 37876.9 Da    PI: 8.6752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10511_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-121135327
                                          S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                          +++C+++++tGtCk+G++CkF+H++
  cra_locus_10511_iso_4_len_2740_ver_3 11 QPECQYYLKTGTCKFGATCKFHHPR 35
                                          799********************96 PP
2zf-CCCH36.39.7e-125981527
                                          --SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                                           C +++rtG+Ck+G++CkF+H++
  cra_locus_10511_iso_4_len_2740_ver_3 59 DCAYYLRTGHCKFGSTCKFHHPQ 81
                                          7********************97 PP
3zf-CCCH391.3e-12209235127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C+f+++tG Ck+G+ CkF+H++
  cra_locus_10511_iso_4_len_2740_ver_3 209 PGQPECQFYMKTGDCKFGAVCKFHHPR 235
                                           5789*********************96 PP
4zf-CCCH40.54.4e-13255281127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ++++lC f++r+G+Ck+G++CkF H++
  cra_locus_10511_iso_4_len_2740_ver_3 255 PGEPLCIFYSRYGICKFGPSCKFDHPM 281
                                           589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-6835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356836IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-51435IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-55481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4225482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65882IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-95981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-46080IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6208235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502208236IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9210235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5212237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5214236IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709254282IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10256281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5257281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4259279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRGEYPERVG QPECQYYLKT GTCKFGATCK FHHPRDKAGI AGKVTLNILG YPLRPNEIDC  60
AYYLRTGHCK FGSTCKFHHP QPANMMVSLR GSAVYPPVQS PTNAGQLSYP RASFIPSPRW  120
QGPSSYAPML LPQGMVSVPG WSAYSGQVAS GSSSENLQQT SGSTQTLGTS RQSEAANFES  180
QGTHSSYPSA SVPMGYYALQ REAVFPERPG QPECQFYMKT GDCKFGAVCK FHHPRERVIP  240
APDCVLSSIG LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGVFTYNLPS SSTEVPAVRR  300
LLASSSSGSA TLTLASEGLI EASSSKARRL PLSEARKMPS GDASIDPEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087153.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2P6R5340.0A0A2P6R534_ROSCH; Putative transcription factor C3H family
STRINGXP_004302155.10.0(Fragaria vesca)