PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10511_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 265aa    MW: 28376 Da    PI: 8.2644
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10511_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.1e-13125151127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C+f+++tG Ck+G+ CkF+H++
  cra_locus_10511_iso_5_len_2676_ver_3 125 PGQPECQFYMKTGDCKFGAVCKFHHPR 151
                                           5789*********************96 PP
2zf-CCCH413.1e-13171197127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ++++lC f++r+G+Ck+G++CkF H++
  cra_locus_10511_iso_5_len_2676_ver_3 171 PGEPLCIFYSRYGICKFGPSCKFDHPM 197
                                           589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-6124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502124152IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9126151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6128153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5130152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709170198IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7170197IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10172197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4175195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMVSLRGSAV YPPVQSPTNA GQLSYPRASF IPSPRWQGPS SYAPMLLPQG MVSVPGWSAY  60
SGQVASGSSS ENLQQTSGST QTLGTSRQSE AANFESQGTH SSYPSASVPM GYYALQREAV  120
FPERPGQPEC QFYMKTGDCK FGAVCKFHHP RERVIPAPDC VLSSIGLPLR PGEPLCIFYS  180
RYGICKFGPS CKFDHPMGVF TYNLPSSSTE VPAVRRLLAS SSSGSATLTL ASEGLIEASS  240
SKARRLPLSE ARKMPSGDAS IDPEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087153.11e-144zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF91e-124ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1B1LZV81e-136A0A1B1LZV8_BETPL; ZFP10
STRINGXP_004302155.11e-136(Fragaria vesca)