PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_105225_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 245aa    MW: 26264.1 Da    PI: 10.1087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_105225_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1061.9e-334097158
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                                  WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                                          ldDg++WrKYGqK vk+s+fprsYYrCt+agC vkk+vers+ed ++v++tYeg Hnh
  cra_locus_105225_iso_1_len_732_ver_3 40 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTAGCGVKKRVERSSEDATIVITTYEGMHNH 97
                                          59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3426100IPR003657WRKY domain
SuperFamilySSF1182906.93E-293299IPR003657WRKY domain
PROSITE profilePS5081132.06435100IPR003657WRKY domain
SMARTSM007744.0E-394099IPR003657WRKY domain
PfamPF031061.7E-264197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
XEEQADRDKT RKELKPRKKN QKRERPPRFA FMTKSEIDQL DDGFRWRKYG QKAVKNSPFP  60
RSYYRCTTAG CGVKKRVERS SEDATIVITT YEGMHNHCSP MPNRGSLGLI QVPNQMTPSF  120
GATNFVAANG GGIGGIGIGI GGANGGGGLG VSGVGSVAVG GGVAVAPTSS SSFVLPQVIP  180
NYYQQQQQPF LQPVQAPAPA PAPAPAPAQA QTQAPYTMSF NPTNNSSMFS PNLAYNQERQ  240
FCPSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-27331001077Probable WRKY transcription factor 4
2lex_A9e-27331001077Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1618RDKTRKELKPRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO229003e-45WRK23_ARATH; WRKY transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]