PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10617_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 350aa    MW: 38830.8 Da    PI: 9.1212
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10617_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.95.3e-31217275158
                             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkld.eksrkpylheSRhkhAlrRpRgsgGrF 58 
                                           +ep+YVNaKQy++Il+RRq Rak+e e+k+  + +rkpylheSRh hA+rR+Rg+gGrF
  cra_locus_10617_iso_1_len_1472_ver_3 217 EEPVYVNAKQYHGILRRRQLRAKAELENKVArAGTRKPYLHESRHLHAMRRARGCGGRF 275
                                           69***************************851558***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-33215278IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.934216278IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26218275IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23219241IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860221241IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23252275IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
SHLNCYTKLM AAYSDYGTFS LTKXLGKLHF RIGLLINEXT QLAANRDVGP ISLSMKQSSD  60
RTNQVKSATN SIQHPLTHSE TCWYDFGTNA VSQGVLDFSS SRPSMTSRPD PDGSLRINVL  120
ELQANSGKDV GSNIDGEPKS TRLLKTDGNC KYEYFNISTS APIMGESFRP DPQLKLVGHS  180
VACSEPYYWG ASPANAQPWT VHDLNHPRVA LPLEVAEEPV YVNAKQYHGI LRRRQLRAKA  240
ELENKVARAG TRKPYLHESR HLHAMRRARG CGGRFLSSKK NKTSNGNATS QKGTHLNVSV  300
STDEHMSTCS ESTFSRSSGN IDFSGGCQES QGMQNSDALQ WGYQYQWQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18217283266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA