PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10617_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 369aa    MW: 41208.3 Da    PI: 9.1401
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10617_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.85.7e-31236294158
                             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkld.eksrkpylheSRhkhAlrRpRgsgGrF 58 
                                           +ep+YVNaKQy++Il+RRq Rak+e e+k+  + +rkpylheSRh hA+rR+Rg+gGrF
  cra_locus_10617_iso_2_len_1531_ver_3 236 EEPVYVNAKQYHGILRRRQLRAKAELENKVArAGTRKPYLHESRHLHAMRRARGCGGRF 294
                                           69***************************851558***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-33234297IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.934235297IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-26237294IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-23238260IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860240260IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-23271294IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
RPGERPPSFN FPSSIDTTKT IXXRLALXGL NSNTRRTLVD STYHMVYGLI CMHEKTWVFL  60
NLLQILISLS MKQSSDRTNQ VKSATNSIQH PLTHSETCWY DFGTNAVSQG VLDFSSSRPS  120
MTSRPDPDGS LRINVLELQA NSGKDVGSNI DGEPKSTRLL KTDGNCKYEY FNISTSAPIM  180
GESFRPDPQL KLVGHSVACS EPYYWGASPA NAQPWVHSDV HDLNHPRVAL PLEVAEEPVY  240
VNAKQYHGIL RRRQLRAKAE LENKVARAGT RKPYLHESRH LHAMRRARGC GGRFLSSKKN  300
KTSNGNATSQ KGTHLNVSVS TDEHMSTCSE STFSRSSGNI DFSGGCQESQ GMQNSDALQW  360
GYQYQWQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18236302266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516