PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10655_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 200aa    MW: 22713.3 Da    PI: 7.5949
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10655_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.3e-10750344
                                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                           WT+ Ed+ + +a  +++ +   +W +Ia+ ++ g+t+++++ ++
  cra_locus_10655_iso_3_len_1140_ver_3  7 TWTKFEDKMFEQALVMYPDDvpdRWQKIAKSLP-GKTPEDVRVHY 50
                                          7*****************99*************.*********99 PP
2Myb_DNA-binding41.43.3e-13106150347
                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                           +WT+eE+ l++ +  ++G+g+W++I+r    +Rt+ q+ s+ qky
  cra_locus_10655_iso_3_len_1140_ver_3 106 PWTEEEHRLFLIGLSRYGKGDWRSISRNCVVTRTPTQVASHAQKY 150
                                           8***************************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.486158IPR017930Myb domain
SMARTSM007172.0E-9456IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-6754IPR009057Homeodomain-like
PfamPF002495.4E-9751IPR001005SANT/Myb domain
CDDcd001673.21E-9754No hitNo description
SuperFamilySSF466891.94E-12762IPR009057Homeodomain-like
PROSITE profilePS5129419.05199155IPR017930Myb domain
SuperFamilySSF466898.97E-17101155IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-16102154IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-11103149IPR009057Homeodomain-like
SMARTSM007175.5E-9103153IPR001005SANT/Myb domain
PfamPF002495.7E-11106150IPR001005SANT/Myb domain
CDDcd001671.06E-9106150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSDSGVTWTK FEDKMFEQAL VMYPDDVPDR WQKIAKSLPG KTPEDVRVHY EALVHDVLEI  60
DSGRVELPSY IDDDSCGWDS DSKSNQISFG SSGKAKHDVE RKKGTPWTEE EHRLFLIGLS  120
RYGKGDWRSI SRNCVVTRTP TQVASHAQKY YLRQSAVKKE RKRSSIHDIT TAVECKTVPP  180
PRNFGPDGGG YQDFNFPGSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-18470773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263059.11e-101PREDICTED: transcription factor DIVARICATA-like
RefseqXP_027104730.11e-101transcription factor DIVARICATA-like
RefseqXP_027111292.11e-101transcription factor DIVARICATA
RefseqXP_027161713.11e-101transcription factor DIVARICATA
SwissprotQ9FNN64e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A314L9221e-100A0A314L922_NICAT; Transcription factor myb1r1
STRINGXP_009796939.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]