PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10677_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family SBP
Protein Properties Length: 628aa    MW: 68869.5 Da    PI: 9.1826
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10677_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.31.3e-39176253178
                                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS
                                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 
                                           +CqvegC+ dls+akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh+l efDe+krsCrrrL++hn+rr
  cra_locus_10677_iso_2_len_2686_ver_3 176 RCQVEGCNLDLSSAKEYHRKHRVCDGHSKCPKVTVGGLERRFCQQCSRFHSLLEFDEKKRSCRRRLSDHNARR 248
                                           6************************************************************************ PP

                                           -S--- CS
                                   SBP  74 rkkqa 78 
                                           rk+++
  cra_locus_10677_iso_2_len_2686_ver_3 249 RKPRQ 253
                                           **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-32169238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.385174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-37175256IPR004333Transcription factor, SBP-box
PfamPF031105.9E-30177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MEWSGKWDWD NLVMFNSKAS ESLKKLQLTD WEVEDGGEIA AGSFNLSGSG VGSGGSCSDL  60
AHGSSVKSSM SASTDSSSKE GIKPSGFTFE AFESSSGAIT KKMVPARAEL SGTSSPLEAS  120
VVSVELPISL KLGKRSFFEN NSSDSNAKSL ASVVPVSSSA AVKKTKSSSQ NTSIPRCQVE  180
GCNLDLSSAK EYHRKHRVCD GHSKCPKVTV GGLERRFCQQ CSRFHSLLEF DEKKRSCRRR  240
LSDHNARRRK PRQETIQFHS GKLSSSCYGT PLSENFDLIG LFHIFAMAVQ IISTNIEMKK  300
NTRIYVGPFL LKXCFSYXSL TSFCTQISDQ FRDNSKLARL KGFYFLVSAK TIFTPLSLNI  360
AVNLGWIFSK SLSVRLLNEK IGKRTANVND RGRMMXLCFC PYILLMVFGS PLSSSCFXSI  420
QACXCSLALL DGRQQMNFAL NNIKSAGNSS WETVYSAKFT LTKDFPLKSE KAGQPSVPGL  480
HLPYAIPMHS SPSNGVSACK STPAKAFTQG FKETIFSTNL DDSATEFPRA LSLLSTNSWV  540
SSEPESISFD QQHLHANPPT SSMSLPVIHS IPQGLTFASS DYWHTQQQNS ASPNNLHNNN  600
SSSNSGGQSH EIRPFKPHYQ DIYSNALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-27168250284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086806.11e-103squamosa promoter-binding-like protein 12
RefseqXP_011086808.11e-103squamosa promoter-binding-like protein 12
RefseqXP_020551644.11e-103squamosa promoter-binding-like protein 12
TrEMBLA0A2G9H1C01e-103A0A2G9H1C0_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000847343e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444