PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10685_iso_1

Common Name

myc1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 205aa MW: 22439.9 Da PI: 6.9655

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10685_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	88	135	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq cra_locus_10685_iso_1_len_1013_ver_3 88 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 135 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.27E-10	82	139	No hit	No description
SuperFamily	SSF47459	5.5E-18	82	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-18	84	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	84	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-8	88	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	90	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048446	Biological Process	petal morphogenesis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
SLAAAAAAAP NLNGGVRRRR EDDDSAKGVS TSNDANAMNE GDNKRLKTGG SNENHESKAE 60 GEETAKPAEP PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK 120 ALVLDEIINY IQSLQRQVEF LSMKLEAVNS RLSPGIEGFP SKEFGQPPYD PSGMAFGSQS 180 SREYGRDTSP EWLHMQIGGG FERTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00207	DAP	Transfer from AT1G59640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153368.1	1e-105	transcription factor BHLH094 isoform X1
Swissprot	Q69WS3	8e-79	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	Q71SQ1	1e-144	Q71SQ1_CATRO; MYC1
STRING	XP_002520177.1	3e-99	(Ricinus communis)

Publications ? help Back to Top
Chatel G, et al. CrMYC1, a Catharanthus roseus elicitor- and jasmonate-responsive bHLH transcription factor that binds the G-box element of the strictosidine synthase gene promoter. J. Exp. Bot., 2003. 54(392): p. 2587-8 [PMID:12966042]