PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10685_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 251aa    MW: 27635.9 Da    PI: 6.7997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10685_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-11154201455
                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  cra_locus_10685_iso_3_len_1660_ver_3 154 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201
                                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-9148205No hitNo description
SuperFamilySSF474598.24E-18148217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18150218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDQQASYNLA GDTVPYNLAE IWPFPMNSAT AATSFHNNNN AANSLAAAAA AGISMNMNVN  60
LSVNRDHDPM VMDQAPNLNG GVRRRREDDD SAKGVSTSND ANAMNEGDNK RLKTGGSNEN  120
HESKAEGEET AKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC  180
NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRLSP GIEGFPSKEV SFTCVSLIAK  240
RRFTLELHVT W
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153368.11e-110transcription factor BHLH094 isoform X1
RefseqXP_027153369.11e-110transcription factor BHLH089 isoform X2
SwissprotQ0JXE74e-71BPE_ARATH; Transcription factor BPE
TrEMBLQ71SQ11e-167Q71SQ1_CATRO; MYC1
STRINGXP_009776012.12e-87(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]