PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10685_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 203aa MW: 22309.8 Da PI: 6.6844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10685_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.3e-07	154	180	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + cra_locus_10685_iso_5_len_1925_ver_3 154 SHSLAERARREKISERMKILQDLVPGC 180 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.97E-9	148	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-5	148	187	No hit	No description
PROSITE profile	PS50888	11.071	150	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	154	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-8	154	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048446	Biological Process	petal morphogenesis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MDQQASYNLA GDTVPYNLAE IWPFPMNSAT AATSFHNNNN AANSLAAAAA AGISMNMNVN 60 LSVNRDHDPM VMDQAPNLNG GVRRRREDDD SAKGVSTSND ANAMNEGDNK RLKTGGSNEN 120 HESKAEGEET AKPAEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC 180 NKVSVLTYLY TLTNSYFLML LRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00207	DAP	Transfer from AT1G59640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153368.1	8e-77	transcription factor BHLH094 isoform X1
Refseq	XP_027153369.1	7e-77	transcription factor BHLH089 isoform X2
TrEMBL	Q71SQ1	1e-121	Q71SQ1_CATRO; MYC1
STRING	XP_009776012.1	8e-57	(Nicotiana sylvestris)