PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10750_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 1217aa MW: 130832 Da PI: 9.8782

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10750_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	9.2e-08	322	370	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 +WTt Ed+ lv +v+ lG++ W++++ ++ R +k+ck+r++ cra_locus_10750_iso_1_len_4547_ver_3 322 PWTTFEDQALVVLVHDLGPN-WELVSDAINsslqfkcIFRNPKECKERYY 370 8***************77.********9999889*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.863	315	373	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.63E-7	316	376	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-7	319	375	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-8	319	374	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-5	322	373	No hit	No description
Pfam	PF13921	1.8E-6	323	370	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0043981	Biological Process	histone H4-K5 acetylation
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1217 aa Download sequence Send to blast
XGHYRHSVES HVVKYEKTGS SIQEEVGTSA CDVGADFGSQ DNVYEEDEGE TSTYDTSVAF 60 DASKSSRFAQ KRWKNPTKAY SGRTFEVVGD SHYMQCMENK VGSQQLVLGK RPPSSLNVSF 120 PTKRVRTNNR QRITPFTAGT SAYVQVPHKT DASSGDTNSF QDDHSTLHGG SHLPNNLEVD 180 SLAEFEKALP VDSSEMSTKS KKKKKPKHLG SAYDQRWQVD SNFHSEQFQR DHSKKRSEGL 240 QLESNGGSGL LGHVAKKPKL TRPSFDNSFD SAAPVGGSAP SPVASQISNP SRLIRYIGGR 300 DRGGRKNKVL KMPANQSSSG SPWTTFEDQA LVVLVHDLGP NWELVSDAIN SSLQFKCIFR 360 NPKECKERYY LVVDKPIGDG ADSADDSGCS QIYEAMLPGI PKGSARQLFQ KLQGPMEEDT 420 IKSHFEKIMM IEQKLHCRRK QNECHDPKQL QQPHGSHMMA LTQVLPNNLN GGPVLTPLDL 480 CDTTAPSPDL LPLGFQGPHN GGLPISSPGA MAPMLNAPGA NTTVPGSSSM IIGNSLPSSS 540 GPVNGSVRDG RHAVPRSASL SIDEQQRVQQ YNQMLSSRNI SQSNLSSPGA VPGNDRGVRM 600 LPGGNGIGIT GGINRSLPIA RPGFQGIASS SMLNSGSMIS SGMVAIPSPV SMHSGSGSGQ 660 GNSVRPPRDT LPMMRPTQNQ DPQRQMIAPE LQMQVSQGSN QGVPPFGALS SSFPNQTASP 720 PVSSYPLHHQ QSHGMSQQQP HVSSPHHAHL QGTNPQHQAY AIRLAKERHL QHRLLQQQQQ 780 QQQFASSNSL IPHVQPQAKL PVSPPPQNSS QVTTPTVSLS PLSSASPVTA MPPNQQKNQL 840 LPHGLARGAS SGSSGLTNQV GKQRQRQQQQ QQFQPANRHH PQQRQQSQPQ QQSKVLKGVG 900 RGNMMMHQNI STDPSMLNGL SANSGTQSAE KGDQSMHLLQ GQSMYAGSGM NSVQSGKSLV 960 HHSSNQSQPH QKTYSGQAPP LSKHLQQMPN HSDNVNQGHI SAAASAPTLS TGHQPISPMT 1020 MASSSQQQQP QLQPHQKLVN PSQPNVQRVL QNRHVNSEPS TKLQGRESQA EQSPITNSGQ 1080 MGSVATTPQA SGDATSVKQV APSFGCAQSR TSESLYDSVS SNPITNISSV GTPPTNSTSN 1140 EPSPQAGHGL GQRQPSGNLP SVGHDVGMQW QQKPPSPAPQ QQQASSQQVP PPSHSQQQAQ 1200 LVGNGSLFVK PADSRLE

Sequence ? help Back to Top

Protein Sequence Length: 1217 aa Download sequence Send to blast

XGHYRHSVES HVVKYEKTGS SIQEEVGTSA CDVGADFGSQ DNVYEEDEGE TSTYDTSVAF  60
DASKSSRFAQ KRWKNPTKAY SGRTFEVVGD SHYMQCMENK VGSQQLVLGK RPPSSLNVSF  120
PTKRVRTNNR QRITPFTAGT SAYVQVPHKT DASSGDTNSF QDDHSTLHGG SHLPNNLEVD  180
SLAEFEKALP VDSSEMSTKS KKKKKPKHLG SAYDQRWQVD SNFHSEQFQR DHSKKRSEGL  240
QLESNGGSGL LGHVAKKPKL TRPSFDNSFD SAAPVGGSAP SPVASQISNP SRLIRYIGGR  300
DRGGRKNKVL KMPANQSSSG SPWTTFEDQA LVVLVHDLGP NWELVSDAIN SSLQFKCIFR  360
NPKECKERYY LVVDKPIGDG ADSADDSGCS QIYEAMLPGI PKGSARQLFQ KLQGPMEEDT  420
IKSHFEKIMM IEQKLHCRRK QNECHDPKQL QQPHGSHMMA LTQVLPNNLN GGPVLTPLDL  480
CDTTAPSPDL LPLGFQGPHN GGLPISSPGA MAPMLNAPGA NTTVPGSSSM IIGNSLPSSS  540
GPVNGSVRDG RHAVPRSASL SIDEQQRVQQ YNQMLSSRNI SQSNLSSPGA VPGNDRGVRM  600
LPGGNGIGIT GGINRSLPIA RPGFQGIASS SMLNSGSMIS SGMVAIPSPV SMHSGSGSGQ  660
GNSVRPPRDT LPMMRPTQNQ DPQRQMIAPE LQMQVSQGSN QGVPPFGALS SSFPNQTASP  720
PVSSYPLHHQ QSHGMSQQQP HVSSPHHAHL QGTNPQHQAY AIRLAKERHL QHRLLQQQQQ  780
QQQFASSNSL IPHVQPQAKL PVSPPPQNSS QVTTPTVSLS PLSSASPVTA MPPNQQKNQL  840
LPHGLARGAS SGSSGLTNQV GKQRQRQQQQ QQFQPANRHH PQQRQQSQPQ QQSKVLKGVG  900
RGNMMMHQNI STDPSMLNGL SANSGTQSAE KGDQSMHLLQ GQSMYAGSGM NSVQSGKSLV  960
HHSSNQSQPH QKTYSGQAPP LSKHLQQMPN HSDNVNQGHI SAAASAPTLS TGHQPISPMT  1020
MASSSQQQQP QLQPHQKLVN PSQPNVQRVL QNRHVNSEPS TKLQGRESQA EQSPITNSGQ  1080
MGSVATTPQA SGDATSVKQV APSFGCAQSR TSESLYDSVS SNPITNISSV GTPPTNSTSN  1140
EPSPQAGHGL GQRQPSGNLP SVGHDVGMQW QQKPPSPAPQ QQQASSQQVP PPSHSQQQAQ  1200
LVGNGSLFVK PADSRLE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027159007.1	0.0	chromatin modification-related protein EAF1 B isoform X2
TrEMBL	A0A068U5V9	0.0	A0A068U5V9_COFCA; Uncharacterized protein
STRING	Solyc09g060080.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1926	2	2