PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10790_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 400aa    MW: 44967.4 Da    PI: 4.7082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10790_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.54e-14102149152
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 
                                           s ykGVr +k +g+++AeIrdp        kr++lg++  +eeAak + a +++
  cra_locus_10790_iso_1_len_1756_ver_3 102 SIYKGVRKRK-WGKFAAEIRDP-----FlgKRIWLGTYVNEEEAAKVYQAKKLE 149
                                           57*****999.**********6.....335*****************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-14102150IPR016177DNA-binding domain
PfamPF008473.1E-7102148IPR001471AP2/ERF domain
CDDcd000185.68E-19102150No hitNo description
SMARTSM003804.5E-13103157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17103150IPR001471AP2/ERF domain
PROSITE profilePS5103217.359103161IPR001471AP2/ERF domain
PRINTSPR003675.6E-7104115IPR001471AP2/ERF domain
PRINTSPR003675.6E-7126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVQDTREEQL ILKEISNSMR IVRISYNDPD ATDSDTSEGE EVDDKHVEKK SCKRILKEIV  60
IHNDLSRTSS SNCSQHFENA KEREVQGIKL DENNKKLQRS SSIYKGVRKR KWGKFAAEIR  120
DPFLGKRIWL GTYVNEEEAA KVYQAKKLEF DRLLLLEKNK NCSSSAVESS VCKSTSSSEV  180
GLCSLPSPSS VLDVSKSDPI VEDSGKLAKE SSKQSKEKEN AIQPVSRIAG RSINLAINFS  240
RTSTSXXXXD DDDDDNDLLL NNNNKQEKPT SGFIENLAKQ LYAIMKSEDG VIGKDSISST  300
KGHLQVVPNA GQIQLPIIMA DFKMSPSDCP ELYFEEELEY GNDLKQLGLK EVHSSYCSNS  360
ELELAELFNL NEETCLGLLE TGKIQERDVV DLQWIDELFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110KGVRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438JZ122e-45A0A438JZ12_VITVI; Ethylene-responsive transcription factor ERF118
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519