PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1080_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 675aa    MW: 73188.3 Da    PI: 6.4555
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1080_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07253273526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C+ f++ G C++Gd C +aHg
  cra_locus_1080_iso_4_len_2631_ver_3 253 PCPEFRK-GACRRGDMCEYAHG 273
                                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127966.2E-91697IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.95E-1526107IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.9E-1627107IPR020683Ankyrin repeat-containing domain
CDDcd002041.81E-1327106No hitNo description
PROSITE profilePS5029715.32628104IPR020683Ankyrin repeat-containing domain
SMARTSM002480.122858IPR002110Ankyrin repeat
PRINTSPR014152.7E-52944IPR002110Ankyrin repeat
PROSITE profilePS5008811.9956398IPR002110Ankyrin repeat
SMARTSM002483.9E-46395IPR002110Ankyrin repeat
PRINTSPR014152.7E-58296IPR002110Ankyrin repeat
SMARTSM003569.5E-6248274IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4253273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981253275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4281311IPR000571Zinc finger, CCCH-type
SMARTSM0035668283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MVERDPLAVD EVGLWLVRKK GTKQIGHEER TPLMVAATYG SVDVLKLIVS LPEVDLNRAC  60
GPDKFTALHC ATSGGSVNAV DVVRLLVSAG ADPNVEDANG LRPIDVIVVP PKLLGAKAAL  120
EELLLNNISD GSVGDCNMLL SITTSNASSP ILSSSPEHGS PCSPSELVSS PVESKFGDAP  180
VSSTFEKKEY PVDPSLPDIK NSIYSTDEFR MFSFKVRPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCARRVC  300
FFAHTTEELR PLYVSTGSAV PSPRSAASAA AVMDMAAALS LLPGSPSSHS VMSPSAFNQP  360
MSPTANGMSH NNVAWSQPNV PTLHLPGSNL QSSRLRSSLS ARDIPPKDLN MLQDFDSQQL  420
VLNDLAYFSQ PRPNSVSLNR SGRSKTLTPS NLEELFSAEI TSSPRYGDQA AASGIFSPTH  480
KSAVLNQFQQ QQSMLSPINT NVFSPKNVDH SLLQASFGVS SPGRMSPRSM DPISPMSARL  540
SALAPREKQY QQMRSLSARD LGSNSNPTIV GSPVNSWTKW GSPNGKVDWS VNGDEFAQLR  600
KSSSEMNNDG EEPDLSWVQS LVKESSPEMK DEFAAPISVA ASSGEGLKSN SRTDSIDHSV  660
LGAWLEQMQL DQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160883.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]