PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1080_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 707aa    MW: 77034.9 Da    PI: 6.0165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1080_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07278298526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C++f++ G C++Gd C +aHg
  cra_locus_1080_iso_5_len_2845_ver_3 278 PCPDFRK-GACRRGDMCEYAHG 298
                                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029717.63559166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00985989IPR002110Ankyrin repeat
SuperFamilySSF484037.46E-1759139IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-1059128IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-1860140IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.8E-66075IPR002110Ankyrin repeat
CDDcd002045.39E-1561137No hitNo description
SMARTSM002483.4E-594126IPR002110Ankyrin repeat
PROSITE profilePS5008812.66394129IPR002110Ankyrin repeat
PRINTSPR014154.8E-6113127IPR002110Ankyrin repeat
SMARTSM003564.0E-6273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4277300IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5278298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582278300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4306336IPR000571Zinc finger, CCCH-type
SMARTSM0035631308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MNMNHLTVET EDTFASFLDL AANNDVDGFK KAADHDASSV DEAGLWYGRK KGSKQMVLES  60
RTPLMVAAMY GSIEVLKFIL SLPEVDVNQS CGLDKSTALH CAASGGSVNA VDVVKMLLSA  120
GADPNLTDAN GQRPFDVIVV APKFQELKVS LEKLLATDAA VGEHNLRVST ATSNSNSPPL  180
SPSPGNGSPL SDSDSTSSPK INDIPASSAP EKREYPVDPS LPDIKNSIYA TDEFRMFSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT HEELRPLFVS TGSGVASPRS GTSNASAMDY  360
AAAMSFFPGS PSSVSVMSPS PFTPPMSPSS GNISNMGWAQ QNVPALHLPG SNLQSSRLRS  420
SLNARDIPTE ELNMLSDIEV QKEQELLDEI SRLTLTNIKS NSSSRSARSK TLTPSNLEDL  480
FTVESSSPRY SDQALAAGVF SPTHKSARLN QFQQQQGILS SINTNFPPKN VDHPLLQASF  540
GVPSSGRMSP RSMEPISPMS SRIPMLAQRE KQQQFRSLSS RDLGSSSSAL IGSSMENWSN  600
WGSSSGIDWA MSSDFGRLKR SSSFENANNM EEPDLSWVQT LVRDSTGDGN ETKEFVARYN  660
STPAAVAAAS SADGKKLNDQ VDQLDQFDQT ALTALLDQMQ IDHLVTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14754GRKKGSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176575.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_027176576.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_027176577.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_027176578.10.0zinc finger CCCH domain-containing protein 30-like isoform X2
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068VG460.0A0A068VG46_COFCA; Uncharacterized protein
STRINGXP_002526718.10.0(Ricinus communis)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]