PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10831_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 737aa    MW: 80397.5 Da    PI: 5.3809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10831_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-08248268425
                                           ---SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                           ++C +far G+Ck G++CkF H
  cra_locus_10831_iso_5_len_3010_ver_3 248 RPCLYFAR-GFCKNGSSCKFLH 268
                                           69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.197244271IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018246270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5247269IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5248268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4248269IPR000571Zinc finger, CCCH-type
CDDcd124584.06E-34380479No hitNo description
Gene3DG3DSA:3.30.70.3309.4E-6432490IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549282.8E-8432499IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MDTYEATKIV LSRIQTLDPE NASRITGYIL IQDQGEKEMI RLAFSPESVL VSYVNQAKVC  60
LGISSNSCST PSTPSSPSPF SSNNPISNSN NPNRPNPFSQ ASPRIVIPNN TRFHLNNPSS  120
PSSPWSARSS SSRSASYAAV VNGSTNTASG SSNSSLSLPF YANNNSDLSD EFGNIQVQDQ  180
LSFLDESMDP IVSPSGRSDS VLFPYGNCED NTAHHHQQLH RRSCSVNDVF LGGEDGGGGG  240
GSSGFGWRPC LYFARGFCKN GSSCKFLHNG GGFGEGDSSP DAVGPMVGSP SKIGSFDELL  300
RIKAIQQQRF AAAQQLMASG APPPFAYSKC MNFLSENQRS AAAALMMGDE FHKFGRCRPD  360
RSDFSALGLG GNASSASRQI YLTFPADSTF KEEDVSNYFG NKLVVTEFSN IAAESSIGLT  420
YDFFXYVSEX IYGPVQDVRI PYQQKRMFGF VTFVYPETVK LILAKGNPHF VCDSRVLVKP  480
YKEKGKVPDK KQQQQQQHLD RGEFAGCLSP STLDSREPYE LPFGARMFYS TQEMMMRRKM  540
EQEAELQQAI ELQGRRLRNL QLMDLNNHHH NHQFQPSMMA GVSVPSASQL QPHTNQNLVL  600
PSDGINPEVL EDPSNNQESA NSPTAAAGEQ VLQDTTEGPN HGNESGKEEH SKVENSDFSE  660
SLENILPDNL FASPTKSAEN HSAFATASAS ADESTPITSS SNYIPMLPNT STLSMASLKS  720
CYFQMPRFSS GQEATEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078823.10.0zinc finger CCCH domain-containing protein 23-like isoform X1
RefseqXP_027163077.10.0zinc finger CCCH domain-containing protein 23-like isoform X1
TrEMBLA0A068UM390.0A0A068UM39_COFCA; Uncharacterized protein
STRINGSolyc11g065320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA244122