PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_108663_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 170aa    MW: 18311.3 Da    PI: 10.4656
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_108663_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.61.6e-3676147273
                                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                                           + ++++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+qa+p+i+++tgt++ +a ++
  cra_locus_108663_iso_1_len_509_ver_3  76 PLRRSSTKDRHTKVEGRGRRIRMPAACAARVFQLTKELGHKSDGETIRWLLEQAEPSIIAATGTGTVPAIAM 147
                                           57899***********************************************************88887443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3081153IPR005333Transcription factor, TCP
PROSITE profilePS5136926.4982136IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
INPETLRLME SRNFYQSSGL PPQLTMAQPT SIPIISLKEE PELEEIKPSL LMGSTLPMPM  60
PLQMRQPAMA PPPPPPLRRS STKDRHTKVE GRGRRIRMPA ACAARVFQLT KELGHKSDGE  120
TIRWLLEQAE PSIIAATGTG TVPAIAMSVN GTLKIPTTSP TSAPSAAAAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103361.13e-61transcription factor TCP9-like
SwissprotO646471e-51TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A068UKS11e-60A0A068UKS1_COFCA; Uncharacterized protein
STRINGVIT_15s0048g01150.t011e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201