PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10871_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 363aa    MW: 41397.4 Da    PI: 4.694
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10871_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.8e-10297344653
                                           S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                              Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                           +++k qle+Le+++++++ p+ +++  + + ++L+ r+V  WF  +Ra
  cra_locus_10871_iso_1_len_1443_ver_3 297 RIKKVQLETLERVYKRTKRPTNAMISSIVHVTNLPRRRVLKWFEDQRA 344
                                           68899*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.8E-5288353IPR001356Homeobox domain
PROSITE profilePS500719.88289349IPR001356Homeobox domain
SuperFamilySSF466897.27E-10290353IPR009057Homeodomain-like
CDDcd000861.38E-7292344No hitNo description
Gene3DG3DSA:1.10.10.608.3E-10297346IPR009057Homeodomain-like
PfamPF000467.7E-8297344IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MATAATSLPI LGGSRSHCSK NQPFFLQHPT NGRTNLILPR PSFHSFSLVA FARRRQNAPN  60
STSVTPKKLK KKKNSMSKDA QEDEELDEDA FEALFRQLEE DLKNDGASLD DFDDDDIRED  120
LAKLEKELEE ALKDDELLGA LGSIEDEKTE NEAEDEEEEG EEDENFRTAY EDHNLEEEDD  180
EDNEDDEIPL QLKNWQLKRL AYALKAGRRK TSIKNLAADL CLDRALVLNL LRDPPPNLLM  240
LSAAVPDKPV STVVEPVKEP AEAISSEAIP AIEKSEAKAN MKVPVHVMQR NWSAQKRIKK  300
VQLETLERVY KRTKRPTNAM ISSIVHVTNL PRRRVLKWFE DQRAEDGVPE RRLPYQRPLL  360
QDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15272RRRQNAPNSTSVTPKKLKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551126.11e-121protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A3Q7HP781e-118A0A3Q7HP78_SOLLC; Uncharacterized protein
STRINGSolyc08g061140.2.11e-119(Solanum lycopersicum)