PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10871_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 289aa MW: 33199.9 Da PI: 4.1921

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10871_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.1	2e-10	223	270	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++++++ p+ +++ + + ++L+ r+V WF +Ra cra_locus_10871_iso_5_len_1297_ver_3 223 RIKKVQLETLERVYKRTKRPTNAMISSIVHVTNLPRRRVLKWFEDQRA 270 68899*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.8E-5	214	279	IPR001356	Homeobox domain
PROSITE profile	PS50071	9.88	215	275	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-10	216	279	IPR009057	Homeodomain-like
CDD	cd00086	1.33E-7	218	270	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-10	222	272	IPR009057	Homeodomain-like
Pfam	PF00046	5.5E-8	223	270	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0009414	Biological Process	response to water deprivation
GO:0009682	Biological Process	induced systemic resistance
GO:0009787	Biological Process	regulation of abscisic acid-activated signaling pathway
GO:0010118	Biological Process	stomatal movement
GO:0050832	Biological Process	defense response to fungus
GO:2000022	Biological Process	regulation of jasmonic acid mediated signaling pathway
GO:2000071	Biological Process	regulation of defense response by callose deposition
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSKDAQEDEE LDEDAFEALF RQLEEDLKND GASLDDFDDD DISEENLAKL EKELEEALKD 60 DELLGALGSI EDEKTENEAE DEEEEGEEDE NFRTAYEDHN LEEEDDEDNE DDEIPLQLKN 120 WQLKRLAYAL KAGRRKTSIK NLAADLCLDR ALVLNLLRDP PPNLLMLSAA VPDKPVSTVV 180 EPVKEPAEAI SSEAIPAIEK SEAKANMKVP VHVMQRNWSA QKRIKKVQLE TLERVYKRTK 240 RPTNAMISSI VHVTNLPRRR VLKWFEDQRA EDGVPERRLP YQRPLLQDP

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551126.1	1e-114	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	2e-73	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A438KET7	1e-110	A0A438KET7_VITVI; Protein overexpressor of cationic peroxidase 3
STRING	VIT_04s0008g05190.t01	1e-109	(Vitis vinifera)

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]