PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10904_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 317aa    MW: 35932.4 Da    PI: 6.5172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10904_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.6e-22251472128
                                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                           p G+ F+P+d+el+  yL  k++g++l++e+ ikevd+y++ +P +L +  +++++++y F+k +k  ++gkr
  cra_locus_10904_iso_1_len_1397_ver_3  25 PFGYSFKPKDHELI-TYLFCKANGETLPCEQPIKEVDLYNMiDPGKLFQ--RTQDNNVYVFTKVKKVVENGKR 94 
                                           88************.9*************999******9977*****74..45789***************** PP

                                   NAM  74 knr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                            +r +t + +Wk   k+++++++kg lvg k+ ++f +   +  +k +  m e+ l
  cra_locus_10904_iso_1_len_1397_ver_3  95 IERkVTGNRTWKGVDKSQPIYNEKGVLVGEKRNFTFMN---NMKVKLEYNMTEFVL 147
                                           ***889999***************************94...334678999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-2017167IPR003441NAC domain
PROSITE profilePS5100522.09924168IPR003441NAC domain
PfamPF023652.2E-925146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MESRNQNPHQ ESVQENEFFT KCRIPFGYSF KPKDHELITY LFCKANGETL PCEQPIKEVD  60
LYNMIDPGKL FQRTQDNNVY VFTKVKKVVE NGKRIERKVT GNRTWKGVDK SQPIYNEKGV  120
LVGEKRNFTF MNNMKVKLEY NMTEFVLDKG SLSTAKFRDY VVCKIKKRAK KGRNSQKDFG  180
HTSISKEEEV NSSQNSLVTN STIPFPQSYS EQYFSQNLLV SDAIIFPQSA ADGQNRCQNS  240
LDVDAISFPP EQCCQFTGLQ EGTKCEEIAS VAATGNTSMA PESFEASAQN QEQEVDPLIL  300
DMINGFLSSS PNHGIFP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13708311