PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10904_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 280aa    MW: 31886 Da    PI: 7.6967
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10904_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.22.7e-22251472128
                                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                           p G+ F+P+d+el+  yL  k++g++l++e+ ikevd+y++ +P +L +  +++++++y F+k +k  ++gkr
  cra_locus_10904_iso_2_len_1286_ver_3  25 PFGYSFKPKDHELI-TYLFCKANGETLPCEQPIKEVDLYNMiDPGKLFQ--RTQDNNVYVFTKVKKVVENGKR 94 
                                           88************.9*************999******9977*****74..45789***************** PP

                                   NAM  74 knr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                            +r +t + +Wk   k+++++++kg lvg k+ ++f +   +  +k +  m e+ l
  cra_locus_10904_iso_2_len_1286_ver_3  95 IERkVTGNRTWKGVDKSQPIYNEKGVLVGEKRNFTFMN---NMKVKLEYNMTEFVL 147
                                           ***889999***************************94...334678999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-2117167IPR003441NAC domain
PROSITE profilePS5100522.09924168IPR003441NAC domain
PfamPF023651.6E-925147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESRNQNPHQ ESVQENEFFT KCRIPFGYSF KPKDHELITY LFCKANGETL PCEQPIKEVD  60
LYNMIDPGKL FQRTQDNNVY VFTKVKKVVE NGKRIERKVT GNRTWKGVDK SQPIYNEKGV  120
LVGEKRNFTF MNNMKVKLEY NMTEFVLDKG SLSTAKFRDY VVCKIKKRAK KGRNSQKDFG  180
HTSISKEEEV NSSQNSLNRC QNSLDVDAIS FPPEQCCQFT GLQEGTKCEE IASVAATGNT  240
SMAPESFEAS AQNQEQEVDP LILDMINGFL SSSPNHGIFP