PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10924_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22196.8 Da    PI: 6.925
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10924_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85e-22943135
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
                                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaev
  cra_locus_10924_iso_1_len_923_ver_3  9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEV 43
                                         79********************************9 PP
2K-box79.11.1e-26571183899
                                K-box  38 llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                           +GedL+s+sl++Lq+LeqqL+++lk+iRs+Kn+l++e+i+elq+kek++qe+n++L kk++
  cra_locus_10924_iso_1_len_923_ver_3  57 XMGEDLDSMSLRDLQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAIQEQNNMLAKKIK 118
                                          69**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.932161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-21144IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-20323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-181043IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.43812123IPR002487Transcription factor, K-box
PRINTSPR004042.9E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-203859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2157117IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVXXXXXXX XXXXXXXMGE  60
DLDSMSLRDL QNLEQQLDTA LKHIRSRKNQ LMYESISELQ RKEKAIQEQN NMLAKKIKDK  120
EKIMAEQAQW ENQQNHIPPP PNSTSFLLPQ QLPPCLNVSG TYEGDETAEE ARRNELDLTL  180
DSLYPCHLGC FAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268210.18e-62apetala1
SwissprotQ6E6S72e-63AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0L9TN649e-74A0A0L9TN64_PHAAN; Uncharacterized protein
STRINGGorai.012G185500.13e-77(Gossypium raimondii)
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]