PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10924_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28916.8 Da    PI: 7.5407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10924_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                          krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  cra_locus_10924_iso_2_len_1091_ver_3  9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                                          79***********************************************96 PP
2K-box110.91.3e-3678174499
                                 K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                                           ++ +s + ++ ++ ++ e+ kLk++ie Lqr++R+++GedL+s+sl++Lq+LeqqL+++lk+iRs+Kn+l++e
  cra_locus_10924_iso_2_len_1091_ver_3  78 RQLTSnNPDSAQADWTLEYVKLKAKIELLQRNHRQYMGEDLDSMSLRDLQNLEQQLDTALKHIRSRKNQLMYE 150
                                           5555557889999************************************************************ PP

                                 K-box  76 qieelqkkekelqeenkaLrkkle 99 
                                           +i+elq+kek++qe+n++L kk++
  cra_locus_10924_iso_2_len_1091_ver_3 151 SISELQRKEKAIQEQNNMLAKKIK 174
                                           **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.576161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-34287IPR002100Transcription factor, MADS-box
CDDcd002651.21E-43279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-3086173IPR002487Transcription factor, K-box
PROSITE profilePS5129717.01389179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SSMEKILERY ERYSYAERQL TSNNPDSAQA DWTLEYVKLK AKIELLQRNH RQYMGEDLDS  120
MSLRDLQNLE QQLDTALKHI RSRKNQLMYE SISELQRKEK AIQEQNNMLA KKIKDKEKIM  180
AEQAQWENQQ NHIPPPPNST SFLLPQQLPP CLNVSGTYEG DETAEEARRN ELDLTLDSLY  240
PCHLGCFAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-22174173MEF2 CHIMERA
6byy_B7e-22174173MEF2 CHIMERA
6byy_C7e-22174173MEF2 CHIMERA
6byy_D7e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268210.11e-136apetala1
RefseqXP_027151189.11e-136truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-137AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0K2QQ221e-135A0A0K2QQ22_9GENT; MADS box protein
STRINGVIT_01s0011g00100.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]