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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | cra_locus_10934_iso_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 254aa MW: 28120.9 Da PI: 9.8812 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 40.7 | 4.4e-13 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+h+e+ErrRR+riN + +Lr+l+P K++Ka+ L ++++++k+L
cra_locus_10934_iso_1_len_1438_ver_3 61 RNHSEAERRRRERINGHLTTLRSLIPGT-----SKMDKAALLAQVINHVKEL 107
58*************************7.....6****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 16.025 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.05E-4 | 61 | 109 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.6E-14 | 61 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 9.2E-11 | 61 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.88E-14 | 62 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.7E-13 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 254 aa Download sequence Send to blast |
MDFLNSFSGF SGNYAFQRTV KNGSSSSSSL VLDHEKGELV RSLVRPGQKG VNAEKALIAL 60 RNHSEAERRR RERINGHLTT LRSLIPGTSK MDKAALLAQV INHVKELRKN AAEATKGMLV 120 PTDVDEVRVE QQTDGVGESS YVIRASLCCD YKQELLNDLR QALETLPLKT MRAEIATLGN 180 RMVNVFVISA CDGGKFKETD EGQLLASSVR QVLMSVLDKF YASEEFSSRN ALSSKRRRVS 240 FFNSVNSSSA GNLW |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 66 | 71 | ERRRRE |
| 2 | 234 | 238 | KRRRV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027171205.1 | 1e-127 | transcription factor bHLH30-like | ||||
| TrEMBL | A0A068V5H9 | 1e-124 | A0A068V5H9_COFCA; Uncharacterized protein | ||||
| STRING | XP_009786357.1 | 1e-117 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA11989 | 21 | 23 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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