PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10952_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 369aa    MW: 40189 Da    PI: 8.9409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10952_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37e-54201471128
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                           lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r
  cra_locus_10952_iso_1_len_1632_ver_3  20 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGAR 91 
                                           79****************************.89***************988899******************* PP

                                   NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                           +nra++sgyWkatg+dk+vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  cra_locus_10952_iso_1_len_1632_ver_3  92 PNRAATSGYWKATGTDKPVLTSgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 147
                                           ********************9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-6416181IPR003441NAC domain
PROSITE profilePS5100562.28520181IPR003441NAC domain
PfamPF023653.5E-2821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESTDSSTGG GGGCSQQPHL PPGFRFHPTD EELVVHYLKK KAASAPLPVS IIAEVDLYKF  60
DPWELPAKAT FGEQEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV LTSGGTQKVG  120
VKKALVFYGG KPPKGIKTNW IMHEYRLADN KTNSKPPGCD IANKKGSLRL DDWVLCRIYK  180
KNNTPRPMDH DRDDMNDLMA SIPPSISLGQ PKLPGLKTTN YGALLENEHN LFDGMLSADL  240
NSGGSMSQLT SSASKQQLSL LAGASNVLPA KRTLNSLYWN DDVGNGNSPP TKRFLADSSD  300
GSMATRNDEN ASIASLLSQL PQTPSLHQQS MLGSLGDGVF RQPYQVSGMN WYSXIIKDSA  360
SEAAAVMIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-751718414168NO APICAL MERISTEM PROTEIN
1ut4_B4e-751718414168NO APICAL MERISTEM PROTEIN
1ut7_A4e-751718414168NO APICAL MERISTEM PROTEIN
1ut7_B4e-751718414168NO APICAL MERISTEM PROTEIN
3swm_A4e-751718417171NAC domain-containing protein 19
3swm_B4e-751718417171NAC domain-containing protein 19
3swm_C4e-751718417171NAC domain-containing protein 19
3swm_D4e-751718417171NAC domain-containing protein 19
3swp_A4e-751718417171NAC domain-containing protein 19
3swp_B4e-751718417171NAC domain-containing protein 19
3swp_C4e-751718417171NAC domain-containing protein 19
3swp_D4e-751718417171NAC domain-containing protein 19
4dul_A4e-751718414168NAC domain-containing protein 19
4dul_B4e-751718414168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027127641.10.0NAC transcription factor 56-like
RefseqXP_027172492.10.0NAC transcription factor 56
SwissprotQ9LD441e-120NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2U9IY250.0A0A2U9IY25_CATRO; NAC domain containing protein 056
STRINGcassava4.1_022751m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]